Bioengineering
2015-16 General Catalog
Baskin School of Engineering
335 Baskin Engineering Building
(831) 459-2158
http://www.soe.ucsc.edu
Participating Faculty and Professional Interests
Mark Akeson (Biomolecular Engineering)
Development of nanopore sensors for single molecule identification, epigenetics, bioethics
Manuel Ares Jr. (Molecular, Cell, and Developmental Biology)
RNA processing, structure and function of RNA
Phillip Berman (Biomolecular Engineering)
Baskin Distinguished Professor
Drug development, vaccines, AIDS, monoclonal antibody therapeutics, immunology, molecular cell/biology, recombinant protein production (commercial scale)
David Deamer (Biomolecular Engineering, Emeritus, UC Davis)
Membrane biophysics, nanopore analysis, DNA sequencing, biomolecular self-assembly
David Draper (Applied Mathematics and Statistics)
Bayesian inference, prediction and decision-making; hierarchical modeling; Bayesian non-parametric methods; model specification and model uncertainty; Bayesian data science; accurate Bayesian computations with massive data; quality assessment; risk assessment; statistical applications in the environmental, medical, and social sciences
William Dunbar (Computer Engineering)
Theory and application of feedback control, single-molecule biophysics, nanopore sensors, dynamics and control of biomolecules
Camilla Forsberg (Biomolecular Engineering)
Hematopoietic stem cells, transcriptional regulation, chromatin, blood cell development, cell surface receptors, genomics
Alexander A. Grillo (SCIPP)
Neurophysiology, neural systems, high-energy particle physics
Grant Hartzog (Molecular, Cell, and Developmental Biology)
Biochemistry, genetics, chromatin and transcriptional regulation
David Haussler (Biomolecular Engineering)
Bioinformatics, genomics, computational genomic data analysis, molecular evolution and comparative genomics, genomic and clinical data sharing and standards, cancer genomics, neurodevelopment, stem cell research, immunogenomics, information theory, pattern recognition, machine learning, artificial intelligence, information theory, theoretical computer sciences
Richard Hughey (Biomolecular Engineering and Computer Engineering)
Bioinformatics, hidden Markov models, computer architecture, parallel computation
Michael Isaacson (Electrical Engineering)
Nano- and microfabrication technology and applications to biomedical and diagnostic devices, nanocharacterization of materials with emphasis on the development of microscopy tools, novel modes of imaging, electron and light optics; renewable energy systems; STEM education
Kevin Karplus (Biomolecular Engineering)
Genome assembly from next-generation sequence data (Formerly protein structure prediction), signal processing and statistics for nanopore signals
Douglas Kellogg (Molecular, Cell, and Developmental Biology)
Coordination of cell growth and cell division
Joel Kubby (Electrical Engineering)
Micro-Electro-Mechanical-Systems (MEMS), adaptive optics (AO), optical-MEMS, bio-MEMS, bio-imaging, AO microscopy, AO astronomy
Sri Kurniawan (Computational Media; Computer Engineering)
Human-computer interaction; human factors and ergonomics; accessibility; assistive technology; usability; empirical studies; human-centered design
Alan M. Litke (SCIPP)
Neural systems; retinal processing; development and prosthesis; technology development for neurophysiology; high-energy physics
Todd Lowe (Biomolecular Engineering)
Experimental and computational genomics, non-coding RNA gene finders, high-throughput small RNA sequencing, small RNA roles in cancer, evolution of RNA-based gene regulation
Roberto Manduchi (Computer Engineering)
Computer vision and sensor processing, with application to assistive technology for the visually impaired
Dominic W. Massaro, Emeritus (Psychology)
Glenn L. Millhauser (Chemistry and Biochemistry)
Electron spin resonance; nuclear magnetic resonance, melanocortin receptor signaling, agouti proteins, prions, peptide synthesis
Linda Ogren (Molecular, Cellular, and Developmental Biology)
Endocrinology
Eric Palkovacs (Ecology and Evolutionary Biology)
Freshwater ecology, eco-evolutionary dynamics, fisheries and fish ecology
Nader Pourmand (Biomolecular Engineering)
Bioelectronics, biosensors, chemosensors, nanotechnology, single cell characterization, sequencing, genotyping, pathogen detection, DNA fingerprinting
Raquel Prado (Applied Mathematics and Statistics)
Bayesian non-stationary time series modeling, multivariate time series, biomedical signal processing and statistical genetics
Wendy Rothwell (Biomolecular Engineering)
Biotechnology, molecular genetics
Holger Schmidt (Electrical Engineering)
Narinder Singh Kapany Endowed Chair in Optoelectronics
Optofluidics, atom photonics, hollow-core photonics for biomedicine and quantum optics, nano-magnetism, nano-magneto-optics, single-particle spectroscopy, ultrafast optics
Andrea Steiner (Community Studies)
Health-care systems, health justice, critical public health, gerontology, ageism, long-term care
Joshua Stuart (Biomolecular Engineering)
Jack Baskin Endowed Chair of Biomolecular Engineering
Computational functional genomics, comparative analysis of gene regulation, cross-species inference of gene networks, probabilistic graphical models
Ellen Kappy Suckiel, Emerita (Philosophy)
Ethics, William James, American philosophy, genetic ethics, ethics of biotechnology
John Tamkun (Molecular, Cell, and Developmental Biology)
Transcriptional regulation, molecular genetics of Drosophila development, regulation of gene expression
John F. Vesecky (Electrical Engineering)
HF radar design and construction and observation of ocean surface winds, waves and currents with applications to coastal and deep water ocean processes; project MEDSAT
Alan M. Zahler (Molecular, Cell, and Developmental Biology)
Molecular biology, splice site selection, and alternative pre-mRNA processing
Jin Z. Zhang (Chemistry and Biochemistry)
Design, synthesis, characterization, and application of nanomaterials, including semiconductor and metal nanoparticles; femtosecond laser spectroscopy; ultrafast dynamics on surfaces and at interfaces; cancer biomarker detection; surface-enhanced Raman spectroscopy
Yi Zuo (Molecular, Cell, and Developmental Biology)
Glia-synapse interaction and synaptic plasticity in vivo
Revised: 09/01/15
